SRL (Sirolimus) Withdrawal

Study Overview The study proposed is a prospective trial of controlled SRL monotherapy
minimization and withdrawal in up to 25 stable non-immune non-viremic LT recipients. Given
the sample size calculations (see Statistical section), we plan to enroll up to 25 SRL
monotherapy patients for this study (Figure 1). All patients will be consented to undergo
laboratory evaluation as well as an enrollment liver biopsy and blood tests. If the patient
meets inclusion/exclusion (I/E) criteria (see below), SRL will be minimized over 6 months
until once a week dosing is achieved. Repeat clinical and immunological blood tests as above
will be performed, and if no biochemical signs of rejection, SRL will be discontinued with
blood tests and liver biopsy 12 months later for similar biochemical, histological and
immunological measures. At any concern for rejection, liver biopsy and assays for equivalent
biochemical, histological and immunological measures will be performed and if rejection is
diagnosed on biopsy, a second attempt at withdrawal will not be performed. Patients will be
monitored as standard of care with clinic visits every 6 months and laboratory tests every 2
weeks. The total study length will be 18 months: 6 month minimization phase and 1 year
follow-up after withdrawal success/failure. The primary outcome will be the proportion of
tolerant patients off SRL therapy with normal liver biochemistry and graft histology at 18
months. Secondary outcomes will include the incidence, severity and reversibility of
rejection, patient/graft survival, resolution of SRL and other non-specific IS effects, and
the assessment of clinical/immunological biomarkers of tolerance. All continuous/categorical
clinical variables will be compared with the appropriate statistical analyses.The goal is
that the primary and secondary aims will provide valuable preliminary data to further
elucidate the mechanisms of mTOR-I immunoregulation and for determining the initial clinical
success/feasibility of the mTOR-I approach (vs. historical 20% CNI withdrawal success seen
in studies from the Immune Tolerance Network [ITN] and other groups). This is all so as to
guide a submission to the Immune Tolerance Network for larger, more adequately powered
prospective trials comparing SRL vs. CNI withdrawal and accompanying biomarker predictors of
tolerance. If this pilot study fails to show a correlation between our biomarkers and the
success/failure of SRL withdrawal, or is associated with an unacceptable low (e.g. <20%)
rate of operational tolerance, then this would avoid the necessity for such large, expensive
trials and support the continued development of alternative approaches to tolerance.

Consent and Initial Phase of Enrollment (see Study Protocol Figure- Appendix A) These liver
transplant candidates (up to 25 SRL) will be approached for consideration and informed
consent into the study. The consent form will include discussion of the risks/benefits of
their current therapy (SRL) and the planned minimization/withdrawal. Specifically, the risks
of minimization/withdrawal (i.e. developing acute or chronic rejection, alloimmune hepatitis
during any portion of the study), although unlikely, will be a major emphasis of the consent
process. The consent form will also include the strict requirement for patients to follow
all instructions from the PI in regard to the close laboratory follow-up occurring
throughout the trial, to diagnose any episode of rejection or concern as early as possible
to be able to respond appropriately. All of the study procedures will be discussed with the
patient during clinic visits. They will be informed that neither participation nor refusal
will influence their clinical care. All laboratory tests or costs related to their care in
the study, with the exception of non-standard of care items (i.e. liver biopsies, blood
assays), will be the responsibility of the patient and/or his/her insurance company. They
will be asked questions afterwards to verify comprehension and then sign the consent form
documenting their agreement to participate. A signed copy of the consent form will be given
to them. Participation is completely voluntary and they may discontinue participation the
study at any time without affecting their care or participation in any other study. No
financial compensation will be given.

Screening Evaluation at Enrollment (see Study Protocol Figure) After long term (> 3 years
post-LT, > 3 months on SRL monotherapy) on SRL monotherapy, inclusion/exclusion criteria
will be reviewed and if appropriate, consent as above will be obtained. If the patient
agrees and signs consent, baseline standard of care screening laboratories complete blood
count, comprehensive metabolic panel, sirolimus (CBC, CMP, SRL trough level, fasting lipid
profile, hemoglobin A1C [HbA1C], urine protein/creatinine ratio) and non-standard of care
biomarker assays (blood immunophenotyping, proteogenomics) and liver biopsy (histology and
graft immunohistochemistry) will be performed as dictated by the protocol. In addition, the
liver biopsy will be used to determine stability in graft function (i.e. no evidence of
rejection or immune-mediated hepatitis) before considering minimization/withdrawal. SRL
minimization/withdrawal will only be performed if clinically, biochemically and
histologically [by biopsy; liver transplant pathology read (Yang, Rao)] stable. Throughout
the entire study, liver function tests will be monitored every 2 weeks (monthly is standard
of care, so the interim non-standard of care 2 week blood tests will be covered by the study
funds). Patients entering the minimization/withdrawal phases will be reduced by a total dose
of 50% of their baseline dose every month until patients are on 0.5 mg SRL daily. At this
point, every other day dosing will begin x 1 month. If no LFT abnormalities, twice weekly
dosing x 1 month, then once a week dosing x 1 month. Prior to complete discontinuation,
repeat clinical (screening labs above) and blood biomarker assays (blood immunophenotyping,
proteogenomics) will be performed. Liver biopsy will not be performed at this juncture
unless there are biochemical signs of liver injury. If complete withdrawal is deemed safe
(no evidence of biochemical abnormalities) patients will be withdrawn completely (i.e. the
once/week SRL dose discontinued) and followed off IS therapy for one year. In this time
period, liver function tests will be monitored every 2 weeks, as usual, and repeat clinical
(screening labs above), liver biopsy and blood (blood immunophenotyping, proteogenomics)
assays performed at the end of this year or at any concern for rejection.

Blood and Tissue Samples Standard of care laboratories (CBC, CMP) will be performed every
month on all patients, and only LFTs performed in the interim 2 weeks between each month
(non-standard of care; covered by the study funds) until complete withdrawal. 3 green top 5
mL and 3 red top 5 mL tubes of blood for biomarker assays will be taken on all patients
prior to study enrollment, prior to complete withdrawal, and one year after withdrawal or at
the time of suspected rejection. Liver biopsy (one 3 cm biopsy- 2 cm for histology and 1 cm
for genomic assays) will be performed at baseline (pre-minimization) and 1 year post
withdrawal. A separate clinical informed consent will be obtained each time a liver biopsy
is performed. If the patient develops elevation in liver transaminases requiring a liver
biopsy at any stage of the study protocol, blood (all for immune monitoring (IM) assays)
will be requested from the patient at the time of the biopsy. If rejection occurs, the
patient will be followed in the study until completion but not be further withdrawn from SRL
or have a liver biopsy at the end of the study

Follow-up Laboratory follow-up is described above- every 2 weeks throughout the trial until
complete withdrawal. Any biochemical (or clinical) signs or significant liver function test
abnormalities will be acted on immediately either by liver biopsy or a pause in IS
withdrawal per investigator discretion. All patients will be seen in the clinic every 3
months to assess for any new signs or symptoms or resolution of drug side effects in the
minimization or withdrawal arm. Quality of life questionnaires; Post Liver Transplant
Quality of Life Instrument (pLTQ) and the Promis-29 profile v1.0 will be administered at the
study onset and after successful vs. unsuccessful withdrawal (end of study)

Outcome Measures The primary outcome will be the proportion of patients off SRL therapy with
normal liver biochemistry and graft histology at 12 months (i.e. tolerant). Thus, the
incidence of graft dysfunction (acute rejection, immune mediated or autoimmune hepatitis,
chronic rejection) or non-tolerance will be assessed in this SRL withdrawal group and
compared to the historical CNI group (20% tolerant; 80% failure) as the primary endpoint.
This rate will be a composite of the cumulative number of biopsy-proven graft dysfunctions
requiring conversion back to SRL or additional IS therapy or discontinuation of
minimization/withdrawal that occur during the course of the study. Major secondary measures
compared will be the predictive capacity of the blood and graft biomarker assays
(immunophenotyping, genomic/proteomics) before and after minimization/withdrawal in the
success vs. failure groups. Clinical secondary outcomes will be compared: the number of
infectious complications, liver biopsy complications, cardiovascular outcomes (i.e. blood
pressure, diabetes control, lipid levels), renal function, hematopoietic parameters,
gastrointestinal effects, or other side effects of SRL that may or may not improve or
develop with minimization/withdrawal. These will all be documented by a study database
during patient visits, electronic charts and/or by phone communication. Finally, quality of
life (Post Liver Transplant Quality of Life Instrument (pLTQ) and the Promis-29 profile
v1.0) will be analyzed at the end of the study to determine the effect of IS
minimization/withdrawal on other health benefits.

Inclusion Criteria:

1. Adult male and female recipients of all races, ≥ 18-75 years of age

2. Patients who underwent primary living or deceased donor liver transplantation ≥ 3
years (previous to screening ) and on ≥ 3 months of stable SRL monotherapy

3. Recipient of single organ transplant only

4. Liver transplant for non-immune, non-viral (no hepatitis B or hepatitis C virus
unless currently non-viremic) causes

5. Ability to provide informed consent and to comply with the study protocol of IS
withdrawal.

Exclusion Criteria:

1. Inability or unwillingness to provide informed consent

2. Acute cellular rejection within 12 months prior to enrollment

3. Viral (viremic hepatitis B virus [HBV] or hepatitis C virus [HCV]) or immune-mediated
liver disease (Autoimmune hepatitis, primary sclerosing cholangitis, primary biliary
cirrhosis) history

4. Abnormal liver function tests: Direct bilirubin ≥ 1 mg/dL; ([ALT, AST, GGT] or
alkaline phosphatase [AlkPhos] ≥ 2x [ULN]); 5) Abnormal graft histology at
enrollment: a) ≥ Grade 2 inflammation or stage 2 fibrosis; b) Acute or Chronic
Rejection; c) De-novo Autoimmune Hepatitis; d) inflammation of >50% of portal tracts;
e) Other pathology not-specified but deemed high risk per the PI and pathologist; 6)
Ongoing or recurrent substance abuse

7) Retransplantation or combined liver-other organ 8) Human Immunodeficiency Virus(HIV)
co-infection 9) Glomerular Filtration Rate (GFR)<30 ml/min by estimated glomerular
filtration rate ([eGFR]-[MDRD-4])