Evaluation of Primex's PGX Assay to Assess the Clinical Utility of Pharmacogenomics
Status: | Recruiting |
---|---|
Healthy: | No |
Age Range: | 18 - Any |
Updated: | 4/2/2016 |
Start Date: | October 2013 |
End Date: | October 2019 |
Contact: | Zohrab Bostanian, MS |
Email: | zbostanian@rdi-web.com |
Phone: | 8182244235 |
Protocol For The Evaluation of Primex's PGX Assay
Primex's PGX assay is an in vitro, semi automated assay, intended for the determination of
certain genes involved in drug metabolism utilizing buccal swabs. Detection of certain
genotypes is used as an aid in the selection of appropriate medications based on the
individuals' specific genotype and should be used in conjunction with other clinical
information. The results from this tests constitutes one parameter in a multicriterion
medication selection process, encompassing both clinical and laboratory-based assessments.
certain genes involved in drug metabolism utilizing buccal swabs. Detection of certain
genotypes is used as an aid in the selection of appropriate medications based on the
individuals' specific genotype and should be used in conjunction with other clinical
information. The results from this tests constitutes one parameter in a multicriterion
medication selection process, encompassing both clinical and laboratory-based assessments.
The way a person responds to a drug (this includes both positive and negative reactions) is
a complex trait that is influenced by many different genes. Without knowing all of the genes
involved in drug response, scientists have found it difficult to develop genetic tests that
could predict a person's response to a particular drug. Once scientists discovered that
people's genes show small variations (or changes) in their nucleotide (DNA base) content,
all of that changed—genetic testing for predicting drug response is now possible.
Pharmacogenomics is a science that examines the inherited variations in genes that dictate
drug response and explores the ways these variations can be used to predict whether a
patient will have a good response to a drug, a bad response to a drug, or no response at
all.
The Gene super family of Cytochrome P450 is primarily responsible for clearance of the
different drugs and variations in different genes affect the metabolism of different classes
of drugs. In our test we have concentrated on the genes and specific variations of those
genes which have been studied best and already have existing and convincing data by peer
reviewed journals.
Since one of the major classes of drugs that are affected by the Cytochrome P450 pathway are
anti-coagulants, we have also added certain genes that are involved in coagulation
variations of which might have additive affects on the coagulation status of the patient.
Having this information can aid the physician in making better decisions when prescribing or
dosing anti-coagulants.
Description of the Primex PGX Assay:
DNA is isolated from subject buccal swabs and is subjected to PCR and Real Time PCR for
determination of the genetic variations detailed above. After the variations are determined,
known effects of the variations (i.e. reduced activity or hyperactivity) are reported to a
pharmacist and these effects in combination with the subjects medication list are used to
further establish clinical significance or utility. The physician then can make a decision
to change the medication as recommended. If the physician makes any changes to the subject's
medication regimen, then in 3 months he/she will assess the changes and reports the
findings; hence establishment of the clinical utility of our test.
Analytical Performance Objectives:
Assess the reproducibility of Primex's PGX assay with samples run in replicates of 3, twice
a day, for a minimum 5 days.
Clinical Performance Evaluation Objectives:
Assess the clinical performance characteristics of Primex's PGX assay for the genotypes
determined in the different genes of the CYP450 gene super family and genes related to
coagulation by Life Technology's QuantSudio 12kFlex open array real time PCR system. There
are no predicate devices therefore the clinical utility will be assessed by predicted
phenotype and the number of effective changes made by the physicians to the subject's drug
regimen.
Acceptance criteria for comparison of the Primex's PGX assay results to clinical changes
made to the subject's drug regimen:
The clinical sensitivity and specificity of the Primex's PGX assay results to clinical
changes made are a minimum of 65% and 90%, respectively. Results of the prior drug regimen
changes before Primex's PGX testing will be provided and may be used for comparative
analysis.
Investigator Feedback:
At the conclusion of the clinical study, the investigator will assess the clinical
performance characteristics evaluated and acceptability of the Primex's PGX assay in a
written report/letter to the sponsor.
a complex trait that is influenced by many different genes. Without knowing all of the genes
involved in drug response, scientists have found it difficult to develop genetic tests that
could predict a person's response to a particular drug. Once scientists discovered that
people's genes show small variations (or changes) in their nucleotide (DNA base) content,
all of that changed—genetic testing for predicting drug response is now possible.
Pharmacogenomics is a science that examines the inherited variations in genes that dictate
drug response and explores the ways these variations can be used to predict whether a
patient will have a good response to a drug, a bad response to a drug, or no response at
all.
The Gene super family of Cytochrome P450 is primarily responsible for clearance of the
different drugs and variations in different genes affect the metabolism of different classes
of drugs. In our test we have concentrated on the genes and specific variations of those
genes which have been studied best and already have existing and convincing data by peer
reviewed journals.
Since one of the major classes of drugs that are affected by the Cytochrome P450 pathway are
anti-coagulants, we have also added certain genes that are involved in coagulation
variations of which might have additive affects on the coagulation status of the patient.
Having this information can aid the physician in making better decisions when prescribing or
dosing anti-coagulants.
Description of the Primex PGX Assay:
DNA is isolated from subject buccal swabs and is subjected to PCR and Real Time PCR for
determination of the genetic variations detailed above. After the variations are determined,
known effects of the variations (i.e. reduced activity or hyperactivity) are reported to a
pharmacist and these effects in combination with the subjects medication list are used to
further establish clinical significance or utility. The physician then can make a decision
to change the medication as recommended. If the physician makes any changes to the subject's
medication regimen, then in 3 months he/she will assess the changes and reports the
findings; hence establishment of the clinical utility of our test.
Analytical Performance Objectives:
Assess the reproducibility of Primex's PGX assay with samples run in replicates of 3, twice
a day, for a minimum 5 days.
Clinical Performance Evaluation Objectives:
Assess the clinical performance characteristics of Primex's PGX assay for the genotypes
determined in the different genes of the CYP450 gene super family and genes related to
coagulation by Life Technology's QuantSudio 12kFlex open array real time PCR system. There
are no predicate devices therefore the clinical utility will be assessed by predicted
phenotype and the number of effective changes made by the physicians to the subject's drug
regimen.
Acceptance criteria for comparison of the Primex's PGX assay results to clinical changes
made to the subject's drug regimen:
The clinical sensitivity and specificity of the Primex's PGX assay results to clinical
changes made are a minimum of 65% and 90%, respectively. Results of the prior drug regimen
changes before Primex's PGX testing will be provided and may be used for comparative
analysis.
Investigator Feedback:
At the conclusion of the clinical study, the investigator will assess the clinical
performance characteristics evaluated and acceptability of the Primex's PGX assay in a
written report/letter to the sponsor.
Inclusion Criteria:
- Buccal swab sample prospectively collected under Informed Consent
- Remnant Buccal swab sample meeting the FDA requirements for use of leftover specimen
- Samples from at least one of the following groups:
- specimens from subjects who are on multiple medications of which at least 2 are
affected by the pathways tested and the physician made changed to their drug regimen
based on the assay interpretations
- subjects who are on multiple medications of which at least 2 are affected by the
pathways tested and the physician made no changes based on the assay interpretations
- Subjects with Chronic disease
- Subjects with different ethnic backgrounds
- Subjects from different geographical areas
- Apparently healthy subjects
- Clinical information required per CRF is available
Exclusion Criteria:
- Samples that do not meet all inclusion criteria
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