Inhibiting Fatty Acid Synthase to Improve Efficacy of Neoadjuvant Chemotherapy

Primary Objective

• Estimate the rate of pathologic complete response (pCR) in patients with triple negative
breast cancer and FASN expression treated with standard neoadjuvant chemotherapy (NAC) in
combination with high dose omeprazole.

Secondary Objectives

- Quantify the number of patients with newly diagnosed TNBC with tumors that express FASN.

- Estimate the rate of pCR in patients with triple negative breast cancer (irrespective of
FASN status) treated with standard NAC in combination with high dose omeprazole.

- Describe the safety of incorporating high dose omeprazole with standard NAC.

- Estimate the biologic activity of high dose omeprazole in modulating FASN expression and
activity.

This is a single arm Phase II study. Patients should begin therapy within 7 working days of
study entry. Patients will be treated with omeprazole 80 mg orally twice a day (BID)
beginning 4-7 days prior to chemotherapy and continuing until surgery. After the brief period
of omeprazole monotherapy, patients will begin standard neoadjuvant chemotherapy with
doxorubicin (60 mg/m2) and cyclophosphamide (600 mg/m2) for 4 cycles followed by paclitaxel
(80 mg/m2) weekly x 12. Doxorubicin and cyclophosphamide (AC) may be administered on a
classical every 3 week or dose dense every 2 week (with growth factor support) schedule at
the treating physician's discretion. Routine incorporation of carboplatin is not recommended,
however use of carboplatin (AUC 6 on week 1, 4, 7, and 10) with paclitaxel is allowed at the
treating investigator's discretion. Chemotherapy will be adjusted based on toxicity according
to standard treatment guidelines. Patients with overt disease progression during AC should
move immediately to paclitaxel therapy. Patients with disease progression during paclitaxel
should proceed immediately to surgery.

Inclusion Criteria

1. Newly diagnosed triple negative breast cancer (TNBC) clinical stage Ic, II, or III

- ER and PR < 10%

- HER2 negative based on one of the following:

- IHC 0 or 1+

- IHC 2+ and FISH negative

- IHC 2+ and FISH equivocal and no indication for HER2 targeted therapy based
on the treating investigators discretion (i.e., HER2: CEP17 ratio < 2.0 or
HER2 total copy number <6)

2. Planned neoadjuvant treatment with anthracycline and taxane containing chemotherapy

3. ≥ 18 years old at the time of informed consent

4. ECOG Performance Status 0-1

5. Ability to provide written informed consent and HIPAA authorization

6. Women of childbearing potential definition must have a negative pregnancy test within
14 days of registration. All women (regardless of sexual orientation, having undergone
a tubal ligation, or remaining celibate by choice) are considered to have childbearing
potential unless they meet one of the following criteria:

- Prior hysterectomy or bilateral oophorectomy;

- Has not had menses at any time in the preceding 24 consecutive months

7. Adequate organ function for anthracycline and taxane based therapy

- LVEF > LLN based on cardiac ECHO or MUGA

- Hgb > 8.5

- ANC > 1,000

- Platelets > 100,000

- Creatinine < 1.5

- T. bili < 1.3

- AST < 2.5 x ULN

Exclusion Criteria

1. Use of prescription PPIs within 12 months prior to study entry [Dexlansoprazole
(Dexilant), Pantoprazole (Protonix), Rabeprazole (Aciphex), Esomeprazole (Nexium),
Lansoprazole (Prevacid), Omeprazole (Prilosec, Zegerid)]

2. Use of OTC PPIs within 6 months prior to study entry [Esomeprazole (Nexium),
Lansoprazole (Prevacid), Omeprazole (Prilosec, Zegerid)]

3. Use of Orlistat or any other known FASN inhibitor within 6 months prior to study entry

4. Nursing mothers are excluded

5. Known hypersensitivity to any component of the formulation or substituted
benzimidazoles

6. Prior osteoporotic fracture