Evaluation of Multiple Protein and Molecular Biomarkers to Estimate Risk of Cancer in Gynecology Patients Presenting With a Pelvic Mass.
Status: | Active, not recruiting |
---|---|
Conditions: | Ovarian Cancer |
Therapuetic Areas: | Oncology |
Healthy: | No |
Age Range: | 18 - Any |
Updated: | 11/11/2018 |
Start Date: | June 30, 2016 |
End Date: | June 30, 2022 |
ANG-003 EMBER Study: Evaluation of Multiple Protein and Molecular Biomarkers to Estimate Risk of Cancer in Gynecology Patients Presenting With a Pelvic Mass.
ANGLE has developed the Parsortix™ Cell Separation System (Parsortix), an automated system
capable of harvesting rare circulating cells for analysis from a sample of peripheral blood
based on cellular size and deformability. In a small pilot study, scientists at the Medical
University of Vienna demonstrated that measurement of a combination of mRNA markers extracted
from CTCs captured using the Parsortix system could be used to identify women with ovarian
cancer. This study is designed to provide specimens for optimization of an assay using
clinical and biomarker information (i.e. demographics, imaging results and/or serum tumor
markers) in combination with mRNA extracted from rare cells in the blood of women presenting
with a pelvic mass for the detection of malignancy.
Primary Objective: Optimization of an assay/algorithm for the differentiation of women with
benign pelvic masses from those with malignant pelvic masses using clinical and biomarker
information (i.e. demographics, imaging results and/or serum tumor markers) in combination
with mRNA markers extracted from rare cells isolated from whole blood. Multiple serum protein
markers and mRNA markers will be measured, and the results will be compared to the actual
clinical diagnosis made for each subject through other recognized methods (i.e.
histopathology). Statistical modeling will be used to combine the clinical information, serum
protein markers and/or mRNA markers for estimation of the risk of malignancy. If successful,
the resulting risk algorithm will be evaluated in future, appropriately powered, prospective
studies.
Exploratory Objective: Use statistical modeling to determine the need for and/or preliminary
design of a mathematical algorithm to combine the clinical information, serum protein markers
and/or mRNA markers for estimation of the risk of malignancy.
capable of harvesting rare circulating cells for analysis from a sample of peripheral blood
based on cellular size and deformability. In a small pilot study, scientists at the Medical
University of Vienna demonstrated that measurement of a combination of mRNA markers extracted
from CTCs captured using the Parsortix system could be used to identify women with ovarian
cancer. This study is designed to provide specimens for optimization of an assay using
clinical and biomarker information (i.e. demographics, imaging results and/or serum tumor
markers) in combination with mRNA extracted from rare cells in the blood of women presenting
with a pelvic mass for the detection of malignancy.
Primary Objective: Optimization of an assay/algorithm for the differentiation of women with
benign pelvic masses from those with malignant pelvic masses using clinical and biomarker
information (i.e. demographics, imaging results and/or serum tumor markers) in combination
with mRNA markers extracted from rare cells isolated from whole blood. Multiple serum protein
markers and mRNA markers will be measured, and the results will be compared to the actual
clinical diagnosis made for each subject through other recognized methods (i.e.
histopathology). Statistical modeling will be used to combine the clinical information, serum
protein markers and/or mRNA markers for estimation of the risk of malignancy. If successful,
the resulting risk algorithm will be evaluated in future, appropriately powered, prospective
studies.
Exploratory Objective: Use statistical modeling to determine the need for and/or preliminary
design of a mathematical algorithm to combine the clinical information, serum protein markers
and/or mRNA markers for estimation of the risk of malignancy.
This study is exploratory in nature and is designed to be hypothesis generating to support
the design of future studies. Women diagnosed with a pelvic mass (ovarian, uterine,
retroperitoneal, etc.) who are scheduled for an imaging guided biopsy, surgical biopsy or
surgical excision for evaluation of their pelvic mass. It is estimated that approximately 200
women will be enrolled for evaluation of the primary and exploratory endpoints. Enrollment
into the study will continue beyond 200 women if necessary to obtain a minimum of 50
evaluable women with a histopathologically confirmed malignancy, including ovarian,
fallopian, peritoneal, endometrial, cervical, etc.
Within 60 days prior to the pelvic mass evaluation procedure, each subject must have a pelvic
imaging study (e.g. ultrasound, CT scan, MRI, etc.) conducted and read to visualize the
pelvic mass according to the current standard of care. Results of the pelvic imaging
study(ies) will be recorded.
Within 30 days prior to, or on the day of the pelvic mass evaluation procedure, collect up to
35mL of whole blood into one 5mL SST tube, which must be drawn first, followed by three
separate 10mL EDTA tubes. Serum from SST tube will be used for protein biomarker testing.
Blood from EDTA tubes will be pooled and processed on the Parsortix™ System to capture and
harvest rare cells. The captured rare cells will be eluted (harvested) and lysed, and total
RNA will be extracted from the cell lysate for evaluation of multiple gene targets.
Imaging guided biopsy, surgical biopsy or surgical excision for evaluation of the pelvic mass
will be performed by a qualified individual. Tissue samples will be sent to the local
pathology department for histological examination in accordance with standard institutional
practices. Results of the histopathological evaluation will be recorded, including the final
diagnosis along with histological sub-type, and if available, stage, of cancer where disease
is identified. Where possible, representative fresh frozen tissue samples from the pelvic
mass will be obtained for research purposes for evaluation of the same mRNA gene targets used
in the cell harvests.
Subjects will be considered negative for malignancy:
- if the subject undergoes surgery and no mass is identified, or;
- if the histopathological findings are negative for malignancy (i.e. benign conditions).
Subjects will be considered positive for malignancy:
- if the histological examination of the tissue taken at the time of the biopsy or surgery
confirms the presence of a malignancy (i.e. ovarian, primary peritoneal, fallopian tube,
endometrial, uterine, cervical, metastatic cancers, etc.).
For the purposes of enrollment, subjects diagnosed with low malignant potential (LMP) /
borderline tumors will be considered as benign (negative for malignancy). However, two
separate analyses of the final study data will be conducted: one where subjects diagnosed
with low malignant potential (LMP) / borderline tumors are classified as being negative for
malignancy and a second time where these subjects are classified as being positive for
malignancy.
For subjects diagnosed with a malignancy, a bi-annual medical record review will be performed
for up to 5 years after their enrollment into the study to collect information regarding
their treatment response, chemotherapy sensitivity and resistance, time to recurrence, time
to progression and overall survival.
An algorithm for the prediction of benign vs. malignant disease will be constructed using the
clinical information, serum biomarkers and mRNA markers. Additional analyses may be performed
within and between various histopathological diagnosis sub-groups. The variable selection and
algorithm construction will be done using various statistical methods, such as logistic
regression, hierarchal clustering, classification and regression trees (CART), ROC curve
evaluation, sensitivity/specificity analysis, visual plotting for determination of
thresholds, etc. The inputs for evaluation may include continuous variables (e.g. age, ovary
and dominant mass dimensions, serum biomarker results, mRNA expression levels, etc.),
categorical variables (e.g. age groups, biomarker results by ranges, mRNA expression levels
by ranges, etc.), and/or binary variables (e.g. presence or absence of particular risk
factors and/or imaging features, age above or below a particular threshold, menopausal
status, biomarker results above or below a particular threshold, mRNA expression levels above
or below a particular threshold, etc.). A threshold for the resulting algorithm(s) output to
differentiate between benign and malignant disease (or a subgroup thereof, such as epithelial
ovarian cancer patients only) will be selected to optimize the sensitivity at a set
specificity (e.g. maximize sensitivity at a minimum specificity level of >80%).
Upon completion of the long-term follow-up period, the association of the clinical data and
markers with the subject's treatment response, chemotherapy sensitivity and resistance, time
to recurrence, time to progression and overall survival will be assessed using the
appropriate statistical methods (e.g. 2x2 tables, correlation analyses, Cox hazards
regression, Kaplan-Meier plotting, etc.).
the design of future studies. Women diagnosed with a pelvic mass (ovarian, uterine,
retroperitoneal, etc.) who are scheduled for an imaging guided biopsy, surgical biopsy or
surgical excision for evaluation of their pelvic mass. It is estimated that approximately 200
women will be enrolled for evaluation of the primary and exploratory endpoints. Enrollment
into the study will continue beyond 200 women if necessary to obtain a minimum of 50
evaluable women with a histopathologically confirmed malignancy, including ovarian,
fallopian, peritoneal, endometrial, cervical, etc.
Within 60 days prior to the pelvic mass evaluation procedure, each subject must have a pelvic
imaging study (e.g. ultrasound, CT scan, MRI, etc.) conducted and read to visualize the
pelvic mass according to the current standard of care. Results of the pelvic imaging
study(ies) will be recorded.
Within 30 days prior to, or on the day of the pelvic mass evaluation procedure, collect up to
35mL of whole blood into one 5mL SST tube, which must be drawn first, followed by three
separate 10mL EDTA tubes. Serum from SST tube will be used for protein biomarker testing.
Blood from EDTA tubes will be pooled and processed on the Parsortix™ System to capture and
harvest rare cells. The captured rare cells will be eluted (harvested) and lysed, and total
RNA will be extracted from the cell lysate for evaluation of multiple gene targets.
Imaging guided biopsy, surgical biopsy or surgical excision for evaluation of the pelvic mass
will be performed by a qualified individual. Tissue samples will be sent to the local
pathology department for histological examination in accordance with standard institutional
practices. Results of the histopathological evaluation will be recorded, including the final
diagnosis along with histological sub-type, and if available, stage, of cancer where disease
is identified. Where possible, representative fresh frozen tissue samples from the pelvic
mass will be obtained for research purposes for evaluation of the same mRNA gene targets used
in the cell harvests.
Subjects will be considered negative for malignancy:
- if the subject undergoes surgery and no mass is identified, or;
- if the histopathological findings are negative for malignancy (i.e. benign conditions).
Subjects will be considered positive for malignancy:
- if the histological examination of the tissue taken at the time of the biopsy or surgery
confirms the presence of a malignancy (i.e. ovarian, primary peritoneal, fallopian tube,
endometrial, uterine, cervical, metastatic cancers, etc.).
For the purposes of enrollment, subjects diagnosed with low malignant potential (LMP) /
borderline tumors will be considered as benign (negative for malignancy). However, two
separate analyses of the final study data will be conducted: one where subjects diagnosed
with low malignant potential (LMP) / borderline tumors are classified as being negative for
malignancy and a second time where these subjects are classified as being positive for
malignancy.
For subjects diagnosed with a malignancy, a bi-annual medical record review will be performed
for up to 5 years after their enrollment into the study to collect information regarding
their treatment response, chemotherapy sensitivity and resistance, time to recurrence, time
to progression and overall survival.
An algorithm for the prediction of benign vs. malignant disease will be constructed using the
clinical information, serum biomarkers and mRNA markers. Additional analyses may be performed
within and between various histopathological diagnosis sub-groups. The variable selection and
algorithm construction will be done using various statistical methods, such as logistic
regression, hierarchal clustering, classification and regression trees (CART), ROC curve
evaluation, sensitivity/specificity analysis, visual plotting for determination of
thresholds, etc. The inputs for evaluation may include continuous variables (e.g. age, ovary
and dominant mass dimensions, serum biomarker results, mRNA expression levels, etc.),
categorical variables (e.g. age groups, biomarker results by ranges, mRNA expression levels
by ranges, etc.), and/or binary variables (e.g. presence or absence of particular risk
factors and/or imaging features, age above or below a particular threshold, menopausal
status, biomarker results above or below a particular threshold, mRNA expression levels above
or below a particular threshold, etc.). A threshold for the resulting algorithm(s) output to
differentiate between benign and malignant disease (or a subgroup thereof, such as epithelial
ovarian cancer patients only) will be selected to optimize the sensitivity at a set
specificity (e.g. maximize sensitivity at a minimum specificity level of >80%).
Upon completion of the long-term follow-up period, the association of the clinical data and
markers with the subject's treatment response, chemotherapy sensitivity and resistance, time
to recurrence, time to progression and overall survival will be assessed using the
appropriate statistical methods (e.g. 2x2 tables, correlation analyses, Cox hazards
regression, Kaplan-Meier plotting, etc.).
Inclusion Criteria:
- Women >18 years of age;
- Documented evidence of a pelvic mass by imaging;
- Selected to undergo biopsy, laparotomy or laparoscopy for pathologic evaluation of
their pelvic mass;
- Willing and able to provide written informed consent.
Exclusion Criteria:
- Known pregnancy;
- Previous malignancy within the past 5 years, excluding skin cancers (squamous cell or
basal cell);
- Unwilling or unable to follow protocol requirements or to provide informed consent.
We found this trial at
1
site
Rochester, New York 14642
Principal Investigator: Richard G Moore, MD
Phone: 585-275-7763
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