Open-Label, Non Randomized Phase 2 Study With Safety Run-In

Open-label, non-randomized, multicentre phase 2 study with a safety run-in evaluating
efficacy and safety of PQR309 in patients with relapsed or refractory lymphoma.

The maximum tolerated dose (MTD) of PQR309 in patients with advanced solid tumours was
defined as 80 mg once daily given continuously (q.d. schedule) in a previous phase 1 study
[8]. The safety run-in of this study will follow a modified 3 + 3 design to evaluate the
safety of 60 and 80 mg PQR309 in patients with relapsed or refractory lymphoma administered
p.o. once daily during a DLT (dose-limiting toxicity) period of 28 days.

In the safety run-in, three patients will be treated at 60 mg PQR309 for 28 days. Enrollment
and treatment of all three patients may occur simultaneously as 80 mg PQR309 p.o. qd was
established as the MTD in solid tumours. Unless a DLT is observed in any of the three
patients during the first 28 days of treatment, the investigators and the sponsor will decide
to escalate the dose to 80 mg.Intermittent dosing schedules may be evaluated if, based on the
overall evaluation of all the clinical and PK (pharmacokinetic) data from this and other
studies with PQR309, data emerge during the step 1 of the phase 2 expansion in this PQR309
002A study, indicating that daily dosing of PQR309 is not adequately tolerated or
inefficacious.

Intermittent dosing schedules may be evaluated if, based on the overall evaluation of all the
clinical and PK data from this and other studies with PQR309, data emerge during the step 1
of the phase 2 expansion in this PQR309 002A study, indicating that daily dosing of PQR309 is
not adequately tolerated or inefficacious.

Inclusion Criteria:

1. Histologically confirmed diagnosis* of relapsed or refractory lymphoma, received at
least two prior lines of therapy including immuno-chemotherapy. Patients with relapsed
Chronic Lymphoid Leukemia (CLL) are eligible if they have received one or more prior
lines of any approved standard therapy. * archival biopsies may be used if obtained up
to a year prior to enrollment; re-biopsy is strongly recommended if last biopsy was
obtained more than a year ago.

2. Only for patients in the Phase 2 part: At least one measurable nodal or extra-nodal
lesion defined as follows: Clearly measurable (i.e. well-defined boundaries) in at
least two perpendicular dimensions on imaging scan with > 1.5 cm in longest transverse
diameter.

3. Age ≥ 18 years

4. Eastern Cooperative Oncology Group (ECOG) Performance Score of 0-1 (See Appendix 2).

5. Adequate organ system functions defined as:

1. Absolute neutrophil count (ANC) ≥1.0x109/l

2. Platelets ≥ 75x109/l

3. Haemoglobin ≥ 85g/L

4. Adequate hepatic function, defined as Total bilirubin ≤ 1.5 times the upper limit
of normal (ULN) and Alanine aminotransferase (ALT) and aspartate aminotransferase
(AST) ≤ 2.5 times ULN (or ALT/AST ≤ 5 times ULN in patients with liver
involvement)

5. Adequate renal function, defined as serum creatinine ≤ 1.5 times ULN

6. Fasting glucose < 7.0 mmol/L; Glycated haemoglobin (HbA1c) < 6.4%

6. Ability and willingness to swallow and retain oral medication.

7. Willingness and ability to comply with the trial procedures

8. Female and male patients with reproductive potential must agree to use effective
contraception from screening until 90 days after discontinuation of PQR309

9. Signed informed consent

Exclusion Criteria:

Any of the following conditions precludes enrollment of a patient:

1. Immunosuppression due to:

- Allogeneic hematopoietic stem cell transplant (HSCT)

- Any immune-suppressive therapy within 4 weeks prior to trial treatment start

- Known HIV infection

2. Autologous stem cell transplant within 3 months prior to trial treatment start.

3. Concomitant anticancer therapy (e.g. chemotherapy, radiotherapy, hormonal therapy,
immunotherapy, biological response modifier, signal transduction inhibitors).

4. Concomitant treatment with medicinal products that increase the pH (reduce acidity) of
the upper gastrointestinal tract, including, but not limited to, proton-pump
inhibitors (e.g. omeprazole), H2-antagonists (e.g. ranitidine) and antacids. Patients
may be enrolled in the study after a wash-out period sufficient to terminate their
effect.

5. Use of any investigational drug within 21 days prior to trial treatment start.

6. Patients who experienced National Cancer Institute (NCI) Common Terminology Criteria
For Adverse Events (CTCAE) ≥ Grade 3 on PI3K/mTOR inhibitors

7. Any major surgery, chemotherapy or immunotherapy within 21 days prior to trial
treatment start.

8. Symptomatic or progressing Central nervous system (CNS) involvement. Exception:
Patients with meningeal involvement can be included upon discussion between the
sponsor and the investigator.

9. Persisting toxicities NCI CTCAE ≥2 related to prior anticancer therapy

10. Presence of gastrointestinal disease or any other condition that could interfere
significantly with the absorption of the study drug.

11. Severe/unstable angina, myocardial infarction or coronary artery bypass within the
last 3 years prior to trial treatment start, symptomatic congestive heart failure New
York Heart Association (NYHA) Class 3 or 4, hypertension BP>150/100mmHg

12. A serious active infection at the time of treatment, or another serious underlying
medical condition that could impair the ability of the patient to receive treatment.

13. Lack of appropriate contraceptive measures (male and female)

14. Pregnant or lactating women

15. Known HIV infection

16. Significant medical conditions which could jeopardize compliance with the protocol.

17. Uncontrolled diabetes mellitus; patients with controlled diabetes may be enrolled (see
fasting glucose and HbA1c levels in inclusion criteria).