Analysis of Cell-free DNA (cfDNA) in Men With Elevated PSA Levels



Status:Recruiting
Conditions:Prostate Cancer
Therapuetic Areas:Oncology
Healthy:No
Age Range:21 - 80
Updated:4/17/2018
Start Date:January 2016
End Date:April 1, 2019
Contact:Jessica B Collins, BA
Email:jessica.collins@vanderbilt.edu
Phone:1-615-343-6485

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A Multi-center Prospective Study to Analyze Cancer-derived Cell-free DNA (cfDNA) in Men With Elevated PSA Levels

This is a multi-centre prospective study in which blood samples will be taken from 1500 male
patients aged between 21-80 scheduled for prostate biopsy. Analysis of cell-free cancer DNA
extracted from these samples will be undertaken to determine whether copy number instability
scores derived from the cfDNA correlates with PSA screening levels and prostate biopsy
results (i.e. Gleason score) in these patients.

The prostate is the most common site of cancer in men with 240,000 new cases diagnosed
annually in the United States with approximately 28,000 yearly deaths. Prostate screening
typically relies on digital rectal exam (DRE) and prostate specific antigen (PSA) levels.
Limitations of the PSA test include its low sensitivity and low specificity and its inability
to distinguish between low-grade and high-grade lesions. Recent screening trials suggest that
PSA-based screening programs result in small or no reduction in mortality, and have
significant treatment-related adverse events (AEs). Better serum/plasma biomarkers are needed
to supplement the PSA test in the diagnosis and management of a disease with a multiplicity
of presentations and clinical outcomes.

Cancer-derived DNA present in peripheral blood (referred to as cell-free DNA or cfDNA) was
first reported in 1948, but research into this area remained in a dormant state for over 50
years. Over the last ten years however, the development of Next Generation Sequencing (NGS)
using massive parallel arrays has allowed researchers to create a database robust enough to
distinguish normal genomic from non-diploid cfDNA. In 2008, fetal trisomy of chromosome 21
was detected by analyzing cfDNA in maternal blood. Since then, the method has been validated
for trisomy 13, 18, and 21 as a clinical laboratory procedure with remarkable accuracy >99%.
Recently, cancer derived cfDNA has been demonstrated to recapitulate genomic tumor DNA.
Current clinical acceptance of the utility of cfDNA in cancer diagnosis has been demonstrated
in multiple abstracts at the 2014 and 2015 ASCO meetings in Chicago.

In a recent publication in Clinical Chemistry, researchers at Vanderbilt University,
Gottingen, Germany, and at the University of Toronto, Canada, analyzed cfDNA in the
bloodstream from healthy controls as compared to those with clinically diagnosed prostate
cancer. The results of this study demonstrated that it is possible to distinguish prostate
cancer from healthy controls without prior knowledge of the genetic signature of the tumors
and with over three times the sensitivity of the FDA-approved blood test for prostate cancer
(i.e., prostate-specific antigen (PSA)). The study examined serum from more than 200 subjects
with prostate cancer and more than 200 controls. The comparative data included PSA levels and
prostate tissue biopsy grading (referred to as the Gleason score). The technique
distinguished prostate cancer from normal controls with 84% accuracy and cancer from benign
hyperplasia and prostatitis with an accuracy of 91%. Because the method quantifies the
inherent chromosomal instability of cancer and can be followed as a function of time (without
having to do an invasive tissue biopsy), it is called a "liquid biopsy." This multi-centre
clinical study will analyze cfDNA from subjects scheduled for prostate biopsy and is designed
to validate the results obtained in the above-mentioned retrospective study. If validated,
the prostate cfDNA determination test will provide a non-invasive test to aid in the
diagnosis of prostate cancer, as well as provide guidance on whether a biopsy should be
performed.

With regard to the study procedures used, the study subject will undergo routine venipuncture
and ~20 millilitres of blood (approximately 2 tablespoons) will be collected. The blood will
then be processed by the Sponsor's laboratory and sent to the Sponsor's testing facility in
Gottingen, Germany.

Inclusion Criteria:

1. Who, in the opinion of the site Investigator, have an abnormal PSA level as measured
by a CLIA certified laboratory or non-USA equivalent within the last 60 days, and/or

2. Who, in the opinion of the site Investigator, have an abnormal digital rectal
examination

Exclusion Criteria:

1. Male subjects with active or historical histologically confirmed diagnosis of
malignancy

2. Male subjects who have participated in a clinical trial involving an investigational
drug within the 28 days prior to signing the informed consent form
We found this trial at
2
sites
1211 Medical Center Dr
Nashville, Tennessee 37232
(615) 322-5000
Principal Investigator: David F Penson, MD, MPH
Phone: 615-343-6485
Vanderbilt Univ Med Ctr Vanderbilt University Medical Center (VUMC) is a comprehensive healthcare facility dedicated...
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Baltimore, Maryland 21201
Principal Investigator: Arif Hussain, MD
Phone: 410-328-8610
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